Computer scientists develop a new AI tool that rivals AlphaFold 3 in mapping RNA

The same family of artificial intelligence that powers today's image generators is now being aimed at one of biology's ...

Clean GitHub repo tricks AI coding agents into running malware

An agentic coding tool tasked with cloning and setting up a seemingly benign GitHub repository could execute a malicious ...
SecurityWeek

Researchers Demo New Claude Code Attack Using Harmless-Looking Repositories to Hijack Developer Machines

Attackers can inject indirect prompts in normal-looking repositories to trick Claude Code into spawning a reverse shell.
eLife

TopoMetry systematically learns and evaluates the latent geometry of single-cell data

A framework for analyzing single-cell genomics data, in which geometrical properties are harnessed to obtain insights on cellular diversity, including precise clustering, clear visualizations, and ...
Frontiers

RNA-Seq Analysis: Methods, Applications and Challenges

RNA-seq has represented a pivotal breakthrough in transcriptomics. Among the successful factors of this technology, two features have had the highest impact: the capability of measuring the whole ...
GitHub

IBSEP: Integrating bulk RNA-seq and scRNA-seq data for cell-type-specific eQTLs prioritization

This repository holds the code for the paper "A unified framework for cell-type-specific eQTLs prioritization by integrating bulk and scRNA-seq data". Traditional eQTL analyses using bulk RNA ...
GitHub

Squidpy - Spatial Single Cell Analysis in Python

Squidpy is the scverse toolkit for scalable analysis and visualization of spatial molecular data. It builds on scanpy and anndata, providing streamlined APIs for feature extraction, spatial statistics ...
Frontiers

fIDBAC: A Platform for Fast Bacterial Genome Identification and Typing

To study the contamination of microorganisms in the food industry, pharmaceutical industry, clinical diagnosis, or bacterial taxonomy, accurate identification of species is a key starting point of ...